JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SESTD1_chr2_179096678_179269832	0/0	t0040	8580	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0041	8580	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0042	8579	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0043	8581	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0044	8569	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0045	8581	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0046	8575	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0047	8581	1	0	0	0	1	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0048	8583	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0049	8580	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0050	8581	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0051	8581	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0052	8582	1	0	0	0	1	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0053	8581	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0054	8581	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0055	8581	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0056	8580	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0057	8582	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0058	8581	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0059	8581	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0060	8581	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0061	8581	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0062	8580	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0063	8581	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0064	8581	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0065	8581	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0066	8569	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0067	8581	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0068	8581	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SETBP1_chr18_44675888_45073510	1/0	t0001	5119	74	29	17	21	3	3	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/1	t0002	5118	23	5	9	4	1	3	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0003	5117	7	6	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0004	5120	5	3	0	1	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0005	5118	4	4	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0006	5119	3	0	3	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0007	5119	3	3	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0008	5119	2	1	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0009	5119	2	2	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0010	5118	2	2	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0011	5119	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0012	5119	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0013	5119	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0014	5118	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0015	5119	1	0	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0016	5119	1	0	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0017	5119	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0018	5119	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0019	5118	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0020	5119	1	0	0	0	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0021	5119	1	0	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510