Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BBS5_chr2_169474494_169511655	1/0	t0006	2134	12	1	2	0	2	6	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0007	2134	11	2	4	1	1	3	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0008	2134	9	9	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0009	2134	8	7	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0010	2134	7	3	0	0	1	3	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0011	2134	7	0	0	7	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0012	2134	5	5	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0013	2136	5	0	0	5	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0014	2086	5	3	0	2	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0015	2085	5	0	0	5	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0016	2085	4	0	0	4	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0017	2133	3	2	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0018	2085	3	0	0	0	0	3	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0019	2232	3	3	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0020	2134	3	3	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0021	2134	2	2	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0022	2214	2	0	0	2	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0023	2134	2	2	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0024	2134	2	0	0	2	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0025	2134	2	0	1	0	0	1	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0026	2134	2	0	0	0	1	1	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0027	2134	1	0	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0028	2132	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0029	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0030	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0031	2134	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0032	2174	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0033	2135	1	0	0	0	0	1	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0034	2133	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0035	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0036	2135	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0037	2134	1	0	0	0	0	1	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0038	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0039	2085	1	0	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0040	2085	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0041	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0042	2085	1	0	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0043	2134	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0044	2134	1	0	0	0	0	1	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0045	2086	1	0	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0046	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0047	2134	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0048	2085	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0049	2134	1	0	1	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS7_chr4_121819329_121875474	1/1	t0001	1693	171	69	26	56	6	12	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0002	1692	88	2	15	52	5	14	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0003	1693	63	7	15	32	2	7	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0004	1692	15	0	6	9	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0005	1693	10	1	3	2	1	3	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0006	1693	9	0	2	7	0	0	copy fasta	BBS7	chr4	121819329	121875474