JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETBP1_chr18_44675888_45073510	0/0	t0022	5119	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0023	5119	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0024	5119	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	t0025	5140	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETD1A_chr16_30952754_30989664	0/1	t0001	868	136	18	39	56	13	9	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	1/0	t0002	868	127	60	24	20	5	17	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	t0003	868	5	0	0	5	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	t0004	868	2	0	2	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	t0005	868	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	t0006	868	1	0	1	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	t0007	868	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	t0008	868	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1B_chr12_121799009_121837656	0/0	t0001	2658	74	0	21	31	7	15	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	1/0	t0002	2657	72	33	15	16	3	4	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0003	2658	43	24	11	2	3	3	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0004	2656	20	0	0	15	0	5	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0005	2657	14	11	3	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0006	2657	4	0	0	2	0	2	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0007	2659	4	0	1	2	1	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0008	2658	4	1	0	2	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0009	2658	3	3	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0010	2657	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0011	2658	2	0	0	1	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0012	2659	2	0	0	2	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0013	2658	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0014	2658	2	1	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0015	2657	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0016	2657	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0017	2657	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0018	2658	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0019	2658	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0020	2657	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0021	2656	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0022	2658	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0023	2658	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/1	t0024	2658	1	0	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0025	2656	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	t0026	2657	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD2_chr3_47011436_47169113	0/1	t0001	838	177	51	32	72	6	15	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	t0002	847	69	2	13	40	1	13	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	t0003	841	40	15	9	7	5	4	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	t0004	838	17	17	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	t0005	844	3	1	2	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	t0006	847	1	0	0	1	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	1/0	t0007	847	1	0	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD3_chr14_99392748_99485859	1/1	t0001	1072	270	61	45	121	12	29	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0002	1073	11	11	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0003	1072	2	2	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0004	1072	1	0	0	1	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0005	1073	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859