JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETD3_chr14_99392748_99485859	0/0	t0006	1072	1	0	0	1	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0007	1072	1	0	0	0	0	1	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0008	1072	1	0	0	1	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0009	1072	1	0	1	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	t0010	1072	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD4_chr21_36029541_36065526	0/0	t0001	1669	246	61	46	101	8	30	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	1/1	t0002	1669	111	15	10	69	5	10	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0003	1669	9	5	4	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0004	1669	5	0	0	5	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0005	1669	4	0	1	0	2	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0006	1669	3	3	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0007	1669	3	3	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0008	1669	2	1	1	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0009	1669	2	0	1	0	1	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0010	1669	2	0	2	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0011	1669	1	0	0	0	0	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0012	1669	1	0	0	1	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0013	1669	1	1	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0014	1669	1	1	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0015	1669	1	0	0	0	0	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0016	1669	1	0	0	0	0	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0017	1669	1	0	0	1	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0018	1669	1	0	1	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0019	1669	1	0	0	1	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0020	1669	1	1	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	t0021	1669	1	1	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD5_chr3_9392615_9483154	0/1	t0001	2600	60	10	13	24	7	5	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0002	2601	34	8	6	13	2	5	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0003	2597	13	0	4	8	0	1	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	1/0	t0004	2603	10	2	2	4	0	1	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0005	2599	10	1	1	7	1	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0006	2602	7	5	1	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0007	2599	7	3	1	0	0	3	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0008	2600	6	6	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0009	2599	5	2	2	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0010	2597	5	4	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0011	2596	5	0	2	0	2	1	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0012	2603	4	4	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0013	2604	4	2	1	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0014	2603	4	4	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0015	2600	4	0	0	4	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0016	2598	4	2	2	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0017	2601	3	3	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0018	2600	3	0	2	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0019	2600	3	0	2	0	0	1	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0020	2611	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0021	2605	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0022	2606	2	1	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0023	2604	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0024	2601	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154