JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETD5_chr3_9392615_9483154	0/0	t0025	2603	2	0	1	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0026	2603	2	0	0	2	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0027	2601	2	0	0	2	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0028	2598	2	0	1	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0029	2597	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0030	2611	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0031	2607	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0032	2606	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0033	2603	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0034	2606	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0035	2603	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0036	2603	1	0	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0037	2601	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0038	2600	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0039	2600	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0040	2601	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0041	2600	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0042	2601	1	0	0	0	0	1	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0043	2598	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0044	2599	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0045	2598	1	0	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0046	2600	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0047	2600	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0048	2600	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0049	2600	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0050	2598	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0051	2596	1	0	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0052	2596	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0053	2597	1	0	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0054	2597	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0055	2596	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0056	2595	1	0	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0057	2600	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	t0058	2589	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD6_chr16_58510517_58528842	0/0	t0001	4834	64	4	6	52	1	1	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0002	4827	57	8	4	39	1	5	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0003	4827	31	0	5	18	4	4	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0004	4832	29	1	0	27	0	1	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	1/1	t0005	4835	25	4	12	4	0	3	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0006	4835	23	14	2	0	3	4	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0007	4834	19	2	8	0	5	4	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0008	4832	15	0	0	2	0	13	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0009	4827	11	0	0	11	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0010	4832	9	9	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0011	4838	9	7	2	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0012	4827	8	0	6	0	1	1	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0013	4836	7	7	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0014	4838	6	6	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0015	4833	5	5	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0016	4831	5	0	0	5	0	0	copy fasta	SETD6	chr16	58510517	58528842