JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETD6_chr16_58510517_58528842	0/0	t0067	4833	1	0	0	0	0	1	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0068	4797	1	0	0	0	1	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0069	4833	1	0	1	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0070	4834	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0071	4834	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0072	4834	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0073	4833	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0074	4831	1	0	0	0	0	1	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0075	4830	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0076	4833	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0077	4833	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0078	4831	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0079	4831	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	t0080	4834	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD7_chr4_139501038_139561219	0/1	t0001	5692	197	32	44	88	11	21	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0002	5708	16	1	6	0	1	8	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0003	5692	9	9	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0004	5708	7	7	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0005	5708	6	5	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0006	5708	5	0	2	0	2	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0007	5708	4	4	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0008	5692	3	0	0	3	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0009	5692	3	3	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0010	5708	3	1	1	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0011	5708	3	3	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0012	5708	3	3	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0013	5708	3	3	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0014	5708	2	2	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0015	5708	2	2	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0016	5692	2	0	0	0	2	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0017	5692	2	1	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0018	5692	2	0	0	1	0	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0019	5692	2	0	0	0	1	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0020	5708	2	2	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0021	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0022	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0023	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0024	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	1/0	t0025	5708	1	0	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0026	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0027	5708	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0028	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0029	5708	1	0	0	0	0	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0030	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0031	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0032	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0033	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0034	5692	1	0	0	0	0	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0035	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0036	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219