JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETD7_chr4_139501038_139561219	0/0	t0037	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0038	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0039	5692	1	0	0	0	1	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0040	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0041	5692	1	0	0	0	0	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0042	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0043	5692	1	0	0	0	0	1	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0044	5692	1	0	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0045	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0046	5692	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0047	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0048	5692	1	0	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0049	5708	1	0	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0050	5692	1	0	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0051	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0052	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0053	5708	1	0	1	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0054	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0055	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0056	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0057	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0058	5708	1	1	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0059	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	t0060	5692	1	0	0	1	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD9_chr5_56904596_56922348	1/1	t0001	497	359	67	70	170	10	40	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	t0002	494	51	3	6	34	2	6	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	t0003	497	11	10	1	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	t0004	497	4	3	1	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	t0005	497	1	1	0	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETDB1_chr1_150921363_150969737	1/1	t0001	540	342	85	55	144	16	40	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	t0002	540	3	1	0	0	2	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	t0003	540	2	2	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	t0004	540	2	0	2	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	t0005	540	1	0	0	0	0	1	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	t0006	540	1	0	0	0	0	1	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	t0007	540	1	0	1	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB2_chr13_49439274_49500003	0/1	t0001	4073	129	8	25	77	7	11	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0002	4075	44	1	13	29	0	1	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0003	4076	44	3	15	17	1	8	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0004	4074	37	4	1	27	1	4	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0005	4076	32	15	2	9	0	6	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0006	4074	14	13	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0007	4075	12	1	8	0	3	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0008	4074	10	0	0	10	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0009	4074	10	9	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0010	4074	6	5	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0011	4075	5	0	5	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0012	4077	5	5	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0013	4075	4	0	0	4	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0014	4074	4	0	0	4	0	0	copy fasta	SETDB2	chr13	49439274	49500003