JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETDB2_chr13_49439274_49500003	0/0	t0015	4073	4	0	0	4	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0016	4075	4	3	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0017	4074	3	0	2	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0018	4076	3	2	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0019	4074	3	2	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0020	4074	3	3	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0021	4076	2	2	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0022	4074	2	0	0	2	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0023	4073	2	0	0	2	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0024	4075	2	2	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0025	4074	1	0	0	0	0	1	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0026	4074	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0027	4074	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0028	4074	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0029	4074	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0030	4076	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0031	4076	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0032	4076	1	0	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0033	4076	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	1/0	t0034	4080	1	0	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0035	4076	1	0	0	0	0	1	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0036	4075	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0037	4075	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0038	4073	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0039	4084	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0040	4073	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0041	4073	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0042	4073	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0043	4073	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0044	4074	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0045	4074	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	t0046	4074	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETMAR_chr3_4298369_4322265	1/1	t0001	22	448	90	76	220	16	44	copy fasta	SETMAR	chr3	4298369	4322265
SETX_chr9_132256356_132359986	1/1	t0001	3068	100	16	21	40	6	15	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0002	3068	83	3	6	68	1	5	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0003	3068	59	8	6	37	4	4	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0004	3066	33	10	5	11	2	5	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0005	3069	18	18	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0006	3068	8	6	2	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0007	3068	8	7	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0008	3069	6	2	2	0	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0009	3067	4	4	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0010	3066	4	4	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0011	3068	3	0	0	3	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0012	3068	3	2	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0013	3068	3	3	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0014	3068	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0015	3068	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0016	3068	2	0	1	0	1	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0017	3068	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986