JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SETX_chr9_132256356_132359986	0/0	t0018	3068	2	1	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0019	3068	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0020	3069	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0021	3069	1	0	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0022	3069	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0023	3068	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0024	3068	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0025	3068	1	0	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0026	3068	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0027	3068	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0028	3068	1	0	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0029	3068	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0030	3068	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0031	3068	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0032	3068	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0033	3068	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0034	3068	1	0	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0035	3068	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0036	3068	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	t0037	3040	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SET_chr9_128684222_128701396	0/1	t0001	2093	170	35	43	59	9	23	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	1/0	t0002	2094	155	38	22	81	2	11	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0003	2095	25	4	2	18	0	1	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0004	2094	15	1	0	11	0	3	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0005	2096	7	0	0	7	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0006	2095	6	0	0	6	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0007	2094	5	4	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0008	2095	3	3	0	0	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0009	2094	2	0	0	2	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0010	2094	1	1	0	0	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0011	2094	1	0	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0012	2094	1	0	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0013	2093	1	0	1	0	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0014	2094	1	1	0	0	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0015	2093	1	1	0	0	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0016	2093	1	0	0	0	1	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	t0017	2092	1	0	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SEZ6L2_chr16_29866159_29904550	1/0	t0001	1072	105	11	24	53	5	11	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/1	t0002	1069	65	5	7	44	2	6	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0003	1073	27	11	4	5	0	7	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0004	1069	24	5	2	13	0	4	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0005	1071	24	0	6	18	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0006	1070	18	13	0	3	1	1	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0007	1070	9	8	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0008	1072	6	2	0	1	0	3	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0009	1071	5	5	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0010	1070	4	4	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0011	1073	4	3	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0012	1072	4	4	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0013	1072	4	4	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550