JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEZ6L2_chr16_29866159_29904550	0/0	t0014	1072	2	2	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0015	1072	1	0	0	1	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0016	1071	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0017	1073	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0018	1073	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0019	1072	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0020	1072	1	0	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	t0021	1072	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L_chr22_26164462_26388596	1/0	t0001	3510	51	29	13	0	3	5	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0002	3509	46	8	7	18	4	9	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0003	3510	33	1	7	19	1	5	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0004	3508	23	19	4	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0005	3508	21	1	11	9	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0006	3507	19	2	9	6	2	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0007	3508	8	5	3	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0008	3511	4	1	3	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0009	3508	3	2	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0010	3508	3	3	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0011	3510	3	0	0	0	0	3	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0012	3510	3	3	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0013	3509	2	0	0	1	1	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0014	3508	2	2	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/1	t0015	3508	2	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0016	3510	2	0	1	0	0	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0017	3508	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0018	3508	1	0	0	0	1	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0019	3510	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0020	3508	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0021	3509	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0022	3510	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0023	3509	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0024	3509	1	0	0	1	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0025	3511	1	0	0	0	0	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0026	3509	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0027	3510	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0028	3509	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0029	3508	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0030	3507	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	t0031	3510	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6_chr17_28949905_29011033	1/0	t0001	1222	128	26	23	58	6	14	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/1	t0002	1221	95	13	19	38	3	21	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0003	1223	42	20	7	13	1	1	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0004	1218	10	8	2	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0005	1224	9	7	1	1	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0006	1221	8	8	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0007	1221	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0008	1222	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0009	1223	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0010	1212	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0011	1222	1	0	1	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033