JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEZ6_chr17_28949905_29011033	0/0	t0012	1222	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0013	1222	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	t0014	1222	1	0	1	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SF1_chr11_64759606_64783542	0/1	t0001	1363	168	13	35	88	9	22	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	1/0	t0002	1363	152	61	17	63	1	9	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0003	1363	11	9	2	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0004	1363	3	3	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0005	1363	2	0	0	0	2	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0006	1363	1	1	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0007	1363	1	0	0	0	0	1	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0008	1363	1	0	0	1	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0009	1363	1	1	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0010	1363	1	1	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	t0011	1363	1	1	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF3A1_chr22_30326988_30361894	0/0	t0001	2709	162	57	33	51	7	14	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/1	t0002	2709	84	1	17	47	3	15	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	1/0	t0003	2709	52	5	14	20	4	8	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0004	2709	44	10	10	19	3	2	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0005	2709	11	0	0	11	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0006	2709	9	0	0	9	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0007	2709	8	0	0	8	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0008	2709	7	7	0	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0009	2709	6	6	0	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0010	2709	4	0	3	0	1	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0011	2709	2	2	0	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0012	2709	2	1	1	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0013	2709	2	0	0	2	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0014	2709	1	1	0	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0015	2709	1	0	1	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0016	2709	1	1	0	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0017	2709	1	0	1	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0018	2709	1	0	0	0	0	1	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0019	2709	1	0	0	0	0	1	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0020	2709	1	0	0	1	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0021	2709	1	1	0	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	t0022	2709	1	0	0	0	0	1	copy fasta	SF3A1	chr22	30326988	30361894
SF3A2_chr19_2231824_2253655	1/1	t0001	225	412	89	79	178	18	46	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	t0002	225	7	6	1	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	t0003	225	1	1	0	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A3_chr1_37951975_37995022	0/0	t0001	1270	99	12	27	45	6	9	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/1	t0002	1269	87	24	20	28	4	10	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0003	1269	47	1	6	35	1	4	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0004	1270	46	9	1	35	0	1	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0005	1269	15	0	5	0	2	8	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0006	1269	14	13	1	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0007	1271	14	0	0	14	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0008	1271	9	0	0	7	0	2	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0009	1270	8	6	2	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0010	1270	7	5	2	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0011	1270	5	5	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022