Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACOT11_chr1_54543228_54615329	0/0	t0009	1300	4	0	0	0	0	4	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0010	1300	3	1	0	0	1	1	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0011	1300	2	0	1	0	1	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0012	1300	2	0	0	2	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0013	1300	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0014	1300	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	t0015	1300	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT12_chr5_81324996_81399134	1/0	t0001	419	83	9	13	43	4	13	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/1	t0002	419	78	16	31	17	4	9	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	t0003	419	61	32	13	7	3	6	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	t0004	419	50	28	6	11	1	4	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	t0005	419	4	4	0	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	t0006	419	1	0	1	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	t0007	419	1	1	0	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT13_chr6_24662077_24710046	0/0	t0001	3618	90	6	14	64	0	6	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0002	3619	57	1	24	25	4	3	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	1/0	t0003	3619	49	2	4	26	2	14	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0004	3619	36	4	7	12	3	10	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/1	t0005	3619	23	10	5	0	5	2	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0006	3619	22	9	4	9	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0007	3616	18	4	1	13	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0008	3619	12	4	1	5	0	2	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0009	3619	12	11	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0010	3619	8	8	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0011	3617	7	6	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0012	3619	5	5	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0013	3619	5	4	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0014	3619	5	0	4	0	1	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0015	3615	5	3	0	2	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0016	3617	4	1	2	1	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0017	3619	4	0	0	4	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0018	3619	3	1	2	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0019	3619	3	2	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0020	3618	3	0	3	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0021	3616	3	3	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0022	3619	2	2	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0023	3619	2	0	0	2	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0024	3618	2	0	0	2	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0025	3619	2	0	0	2	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0026	3619	1	1	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0027	3619	1	0	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0028	3619	1	1	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0029	3619	1	1	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0030	3619	1	1	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0031	3619	1	1	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0032	3619	1	0	0	1	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0033	3619	1	0	0	1	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0034	3619	1	0	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0035	3619	1	0	0	0	1	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	t0036	3619	1	0	0	0	1	0	copy fasta	ACOT13	chr6	24662077	24710046