Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BBS7_chr4_121819329_121875474	0/0	t0007	1693	6	5	0	1	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0008	1693	3	3	0	0	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0009	1693	3	0	0	3	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0010	1693	3	0	0	0	0	3	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0011	1693	1	1	0	0	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0012	1692	1	0	1	0	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	t0013	1692	1	0	0	0	0	1	copy fasta	BBS7	chr4	121819329	121875474
BBS9_chr7_33124564_33611069	0/0	t0001	1333	150	60	19	54	2	15	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	1/0	t0002	1333	38	4	7	13	4	9	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0003	1333	18	3	4	7	0	4	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/1	t0004	1333	16	0	5	3	1	6	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0005	1333	9	0	0	8	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0006	1333	7	0	0	7	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0007	1333	6	6	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0008	1333	4	0	2	0	1	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0009	1333	3	0	3	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0010	1333	3	3	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0011	1333	3	0	0	3	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0012	1346	2	0	0	0	2	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0013	1333	2	2	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0014	1333	2	0	0	1	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0015	1333	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0016	1333	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0017	1333	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0018	1333	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	t0019	1333	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBX_chr3_107517962_107816339	0/1	t0001	6183	51	12	10	18	1	9	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0002	6182	31	11	9	7	1	3	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0003	6182	24	1	5	8	1	9	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0004	6181	15	3	6	1	1	4	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0005	6182	9	0	8	0	1	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0006	6182	8	8	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0007	6182	7	0	5	0	1	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0008	6183	5	4	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0009	6183	4	3	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0010	6183	3	3	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0011	6183	3	3	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0012	6182	3	0	2	1	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0013	6183	3	0	0	3	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0014	6181	3	3	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0015	6181	2	2	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0016	6181	2	2	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0017	6183	2	0	0	1	0	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0018	6181	2	0	0	1	1	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0019	6182	2	0	0	2	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0020	6182	2	2	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0021	6182	2	1	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0022	6183	2	0	1	1	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0023	6183	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0024	6183	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339