JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SF3A3_chr1_37951975_37995022	0/0	t0012	1270	5	0	1	4	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0013	1270	3	3	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0014	1270	3	2	1	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0015	1268	3	1	1	0	0	1	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0016	1270	3	2	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0017	1270	2	0	2	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0018	1269	2	2	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0019	1268	2	0	0	2	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0020	1269	2	0	0	0	0	2	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	1/0	t0021	1269	1	0	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0022	1270	1	0	0	0	0	1	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0023	1269	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0024	1271	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0025	1270	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0026	1268	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0027	1270	1	0	0	0	1	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0028	1271	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0029	1272	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0030	1271	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0031	1269	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0032	1269	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0033	1269	1	0	1	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0034	1269	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0035	1269	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0036	1269	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0037	1270	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0038	1270	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0039	1269	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0040	1269	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0041	1271	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0042	1269	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0043	1269	1	0	0	1	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	t0044	1269	1	1	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3B1_chr2_197384784_197440028	0/1	t0001	2551	188	44	32	88	4	19	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	1/0	t0002	2549	84	12	27	33	3	8	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0003	2550	15	0	0	15	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0004	2550	13	7	3	0	2	1	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0005	2551	8	7	1	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0006	2552	8	0	1	7	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0007	2550	4	4	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0008	2548	4	0	0	4	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0009	2551	2	0	0	0	0	2	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0010	2551	2	0	0	2	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0011	2551	2	2	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0012	2550	2	0	0	2	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0013	2551	2	0	1	0	1	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0014	2550	2	2	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0015	2550	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0016	2550	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0017	2551	1	0	0	1	0	0	copy fasta	SF3B1	chr2	197384784	197440028