JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SF3B1_chr2_197384784_197440028	0/0	t0018	2551	1	0	1	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0019	2551	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0020	2550	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0021	2550	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	t0022	2550	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B2_chr11_66047364_66074308	1/1	t0001	585	386	89	63	186	16	30	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	t0002	585	4	1	1	2	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	t0003	585	2	0	0	2	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	t0004	585	1	1	0	0	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	t0005	585	1	1	0	0	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B3_chr16_70518816_70582668	1/1	t0001	6039	75	1	15	49	3	5	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0002	6039	36	18	2	10	1	5	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0003	6040	35	1	7	24	0	3	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0004	6040	31	4	4	18	1	4	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0005	6040	22	2	5	15	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0006	6039	16	3	1	6	3	3	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0007	6041	9	0	6	3	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0008	6039	9	9	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0009	6039	7	0	0	7	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0010	6040	7	1	4	0	1	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0011	6040	6	0	0	6	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0012	6039	5	0	0	5	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0013	6040	5	5	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0014	6041	5	5	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0015	6040	5	0	0	5	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0016	6039	4	0	1	0	2	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0017	6040	3	3	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0018	6040	3	0	2	0	0	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0019	6040	2	0	0	2	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0020	6039	2	2	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0021	6040	2	2	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0022	6039	2	2	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0023	6039	2	0	0	0	0	2	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0024	6039	2	0	0	0	0	2	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0025	6041	2	0	0	2	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0026	6040	2	0	0	1	0	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0027	6041	2	2	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0028	6040	2	0	0	2	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0029	6040	2	0	1	0	0	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0030	6039	2	0	1	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0031	6040	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0032	6039	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0033	6039	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0034	6039	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0035	6040	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0036	6039	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0037	6041	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0038	6040	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0039	6040	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0040	6039	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668