JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SF3B3_chr16_70518816_70582668	0/0	t0041	6040	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0042	6042	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0043	6041	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0044	6041	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0045	6039	1	0	0	0	0	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0046	6040	1	0	0	0	0	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0047	6039	1	0	0	0	1	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0048	6040	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0049	6039	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0050	6039	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0051	6040	1	0	0	0	0	1	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0052	6039	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0053	6039	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0054	6040	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0055	6041	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0056	6040	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0057	6040	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0058	6039	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0059	6040	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0060	6039	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0061	6040	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0062	6039	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0063	6039	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0064	6040	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	t0065	6039	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B4_chr1_149918317_149932803	1/1	t0001	270	349	89	62	146	14	36	copy fasta	SF3B4	chr1	149918317	149932803
SF3B4_chr1_149918317_149932803	0/0	t0002	270	1	1	0	0	0	0	copy fasta	SF3B4	chr1	149918317	149932803
SF3B5_chr6_144089884_144100573	1/1	t0001	430	429	90	85	200	12	40	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0002	429	4	4	0	0	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0003	430	2	0	0	2	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0004	430	2	2	0	0	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0005	430	1	0	0	0	0	1	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0006	430	1	0	1	0	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0007	430	1	0	0	1	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0008	430	1	0	0	1	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	t0009	430	1	0	0	0	0	1	copy fasta	SF3B5	chr6	144089884	144100573
SF3B6_chr2_24062586_24081326	1/1	t0001	274	347	90	64	133	18	40	copy fasta	SF3B6	chr2	24062586	24081326
SF3B6_chr2_24062586_24081326	0/0	t0002	274	1	1	0	0	0	0	copy fasta	SF3B6	chr2	24062586	24081326
SF3B6_chr2_24062586_24081326	0/0	t0003	274	1	0	0	1	0	0	copy fasta	SF3B6	chr2	24062586	24081326
SF3B6_chr2_24062586_24081326	0/0	t0004	274	1	1	0	0	0	0	copy fasta	SF3B6	chr2	24062586	24081326
SFI1_chr22_31491536_31623588	1/1	t0001	303	312	80	47	130	16	37	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	t0002	301	4	0	4	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	t0003	303	3	2	1	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	t0004	303	2	0	2	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	t0005	303	1	0	0	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFMBT1_chr3_52898572_53051073	0/1	t0001	1953	145	35	26	59	5	19	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	1/0	t0002	1953	104	27	16	47	1	12	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0003	1953	40	3	15	14	3	5	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0004	1953	32	13	8	6	1	4	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0005	1953	2	1	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073