JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFMBT1_chr3_52898572_53051073	0/0	t0006	1953	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0007	1953	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0008	1953	1	0	1	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0009	1953	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	t0010	1953	1	0	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT2_chr10_7153624_7416034	0/0	t0001	5380	22	6	10	3	0	3	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0002	5372	20	8	6	2	1	3	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/1	t0003	5372	14	2	7	3	0	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0004	5376	9	8	0	0	0	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0005	5380	8	8	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0006	5372	7	7	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0007	5384	7	6	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0008	5372	5	1	3	0	0	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0009	5372	4	4	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0010	5372	4	4	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0011	5372	4	4	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0012	5372	3	1	1	1	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0013	5368	3	3	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0014	5376	3	3	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0015	5384	3	0	1	0	0	2	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0016	5372	2	2	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0017	5372	2	1	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0018	5372	2	1	0	0	0	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0019	5372	2	0	0	0	0	2	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0020	5380	2	0	2	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0021	5380	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0022	5372	1	0	0	0	0	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0023	5372	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0024	5368	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0025	5372	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0026	5372	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0027	5372	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0028	5376	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0029	5376	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0030	5380	1	0	0	0	1	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0031	5380	1	0	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0032	5380	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0033	5380	1	0	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0034	5380	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0035	5380	1	0	0	0	0	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0036	5388	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	1/0	t0037	5372	1	0	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	t0038	5380	1	0	0	1	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFN_chr1_26858149_26869456	0/0	t0001	564	137	24	32	57	8	16	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	1/0	t0002	562	92	47	22	16	1	5	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/1	t0003	558	27	1	5	6	3	11	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0004	566	25	8	5	8	3	1	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0005	560	21	1	5	12	0	3	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0006	565	7	1	2	2	0	2	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0007	564	4	1	0	3	0	0	copy fasta	SFN	chr1	26858149	26869456