JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFN_chr1_26858149_26869456	0/0	t0008	568	4	1	2	0	0	1	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0009	559	3	0	0	0	0	3	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0010	563	3	0	0	2	1	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0011	562	2	1	0	1	0	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0012	562	2	0	0	2	0	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0013	562	1	0	0	1	0	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0014	558	1	0	1	0	0	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0015	562	1	1	0	0	0	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0016	562	1	1	0	0	0	0	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	t0017	563	1	1	0	0	0	0	copy fasta	SFN	chr1	26858149	26869456
SFPQ_chr1_35177936_35198145	1/1	t0001	1617	137	25	26	49	9	26	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0002	1614	108	26	18	58	3	3	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0003	1614	81	3	5	71	0	2	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0004	1612	19	17	2	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0005	1612	7	6	1	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0006	1612	7	7	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0007	1614	3	0	0	3	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0008	1614	3	1	0	2	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0009	1614	2	2	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0010	1612	2	0	2	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0011	1617	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0012	1614	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0013	1616	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0014	1616	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0015	1616	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0016	1614	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0017	1614	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0018	1614	1	0	0	0	0	1	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0019	1617	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0020	1617	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	t0021	1614	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFR1_chr10_104117171_104131383	1/1	t0001	693	293	33	65	139	14	40	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	t0002	692	67	25	4	35	0	3	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	t0003	692	61	30	6	21	2	2	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	t0004	692	4	1	1	1	0	1	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	t0005	692	1	1	0	0	0	0	copy fasta	SFR1	chr10	104117171	104131383
SFRP1_chr8_41256962_41314473	1/0	t0001	3520	130	10	33	68	5	13	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0002	3520	61	0	15	41	0	5	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/1	t0003	3520	56	10	17	11	7	10	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0004	3520	27	7	3	12	0	5	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0005	3520	12	12	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0006	3520	10	8	1	0	1	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0007	3520	8	3	3	1	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0008	3520	8	7	1	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0009	3520	5	0	0	5	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0010	3520	4	3	1	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0011	3520	4	3	1	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0012	3520	3	0	0	2	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0013	3520	3	1	0	1	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0014	3520	3	0	0	0	0	3	copy fasta	SFRP1	chr8	41256962	41314473