JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFRP1_chr8_41256962_41314473	0/0	t0015	3520	3	0	1	0	1	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0016	3520	3	3	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0017	3520	2	2	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0018	3520	2	2	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0019	3520	2	1	1	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0020	3520	2	2	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0021	3520	2	0	0	2	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0022	3520	2	2	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0023	3520	2	0	2	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0024	3520	2	0	0	2	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0025	3520	2	0	0	2	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0026	3520	2	2	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0027	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0028	3503	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0029	3520	1	0	1	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0030	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0031	3520	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0032	3520	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0033	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0034	3520	1	0	0	0	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0035	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0036	3520	1	0	0	0	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0037	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0038	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0039	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0040	3520	1	0	0	0	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0041	3520	1	0	0	0	0	1	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0042	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0043	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0044	3520	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0045	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0046	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0047	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0048	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0049	3520	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	t0050	3503	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP2_chr4_153775591_153794083	1/1	t0001	1109	310	76	60	121	15	36	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	t0002	1109	61	3	4	47	0	7	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	t0003	1108	59	8	2	44	1	4	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	t0004	1109	1	1	0	0	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	t0005	1109	1	0	0	1	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	t0006	1108	1	0	0	1	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	t0007	1109	1	0	0	0	0	1	copy fasta	SFRP2	chr4	153775591	153794083
SFRP4_chr7_37900932_37921817	0/1	t0001	1828	100	16	10	55	4	14	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0002	1828	69	5	7	44	1	12	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0003	1828	66	3	19	34	2	8	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0004	1828	65	7	26	24	5	3	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0005	1828	42	9	13	15	1	4	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0006	1828	32	2	2	20	1	7	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0007	1828	30	1	0	26	1	2	copy fasta	SFRP4	chr7	37900932	37921817