JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFRP4_chr7_37900932_37921817	0/0	t0008	1828	16	13	1	2	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0009	1828	10	9	1	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0010	1828	10	10	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0011	1828	8	8	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	1/0	t0012	1828	4	3	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0013	1828	3	3	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0014	1828	3	1	2	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0015	1828	3	3	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0016	1828	2	2	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0017	1828	1	0	0	1	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0018	1828	1	1	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0019	1828	1	0	0	1	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0020	1828	1	1	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0021	1828	1	0	0	0	1	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0022	1828	1	0	1	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0023	1828	1	1	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0024	1828	1	0	0	1	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	t0025	1828	1	0	0	1	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP5_chr10_97761751_97776999	0/1	t0001	930	166	23	34	78	8	22	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	1/0	t0002	930	107	11	13	73	3	6	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0003	924	39	34	2	2	0	1	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0004	930	15	1	11	0	0	3	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0005	924	14	1	4	9	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0006	924	11	11	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0007	930	8	8	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0008	930	5	0	0	5	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0009	930	3	3	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0010	924	3	2	0	0	0	1	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0011	930	2	0	0	0	0	2	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0012	930	1	0	0	0	0	1	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0013	930	1	0	1	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0014	930	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0015	930	1	0	0	0	0	1	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0016	930	1	0	0	0	0	1	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0017	930	1	0	0	0	1	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	t0018	895	1	0	1	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFSWAP_chr12_131706090_131804738	0/1	t0001	391	244	40	64	104	10	25	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	t0002	391	42	23	5	5	0	9	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	t0003	391	24	22	1	0	1	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	1/0	t0004	391	7	1	1	1	1	2	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	t0005	391	1	0	1	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFT2D1_chr6_166314728_166347545	0/1	t0001	554	316	64	55	144	14	38	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	1/0	t0002	554	54	18	21	6	2	6	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	t0003	549	10	4	0	5	0	1	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	t0004	552	6	6	0	0	0	0	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	t0005	549	2	0	0	1	0	1	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D2_chr1_168221004_168258021	0/1	t0001	10561	117	15	21	62	4	14	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	1/0	t0002	10558	68	15	13	32	2	5	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0003	10555	22	3	2	11	1	5	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0004	10558	17	0	0	13	0	4	copy fasta	SFT2D2	chr1	168221004	168258021