JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFT2D2_chr1_168221004_168258021	0/0	t0005	10558	8	0	0	8	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0006	10558	6	6	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0007	10560	6	6	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0008	10557	5	5	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0009	10557	5	4	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0010	10558	4	1	2	0	1	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0011	10559	3	2	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0012	10557	3	3	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0013	10561	3	0	1	0	1	1	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0014	10562	3	1	0	2	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0015	10558	3	0	1	0	0	2	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0016	10559	3	0	0	3	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0017	10555	3	0	0	3	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0018	10562	3	3	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0019	10557	3	3	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0020	10559	2	1	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0021	10561	2	0	1	0	0	1	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0022	10561	2	0	0	0	0	2	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0023	10560	2	0	0	2	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0024	10561	2	1	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0025	10558	2	0	0	2	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0026	10558	2	0	0	2	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0027	10558	2	0	0	2	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0028	10558	2	0	0	2	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0029	10556	2	1	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0030	10559	2	0	1	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0031	10558	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0032	10558	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0033	10559	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0034	10559	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0035	10559	1	0	0	0	0	1	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0036	10561	1	0	0	0	0	1	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0037	10561	1	0	0	0	0	1	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0038	10561	1	0	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0039	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0040	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0041	10561	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0042	10561	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0043	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0044	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0045	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0046	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0047	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0048	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0049	10562	1	0	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0050	10562	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0051	10561	1	0	0	0	1	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0052	10562	1	0	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0053	10561	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0054	10562	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021