JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFT2D2_chr1_168221004_168258021	0/0	t0055	10558	1	0	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0056	10557	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0057	10556	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0058	10557	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0059	10558	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0060	10558	1	0	1	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0061	10558	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0062	10560	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0063	10559	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0064	10559	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0065	10556	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0066	10560	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0067	10557	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0068	10561	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0069	10561	1	0	0	0	0	1	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0070	10561	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0071	10561	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0072	10560	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0073	10560	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0074	10562	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	t0075	10557	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D3_chr2_127696497_127710242	0/1	t0001	3099	197	40	40	93	10	13	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0002	3099	108	25	21	42	7	13	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0003	3099	31	16	4	7	0	4	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0004	3099	7	0	7	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0005	3099	6	0	0	6	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0006	3098	3	3	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0007	3099	3	3	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0008	3099	3	0	0	0	0	3	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0009	3099	2	1	1	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0010	3099	2	0	0	2	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0011	3099	2	0	0	2	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0012	3099	2	0	1	0	1	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0013	3099	2	2	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0014	3099	2	0	0	0	0	2	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0015	3099	2	2	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0016	3099	2	2	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0017	3099	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0018	3099	1	1	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0019	3099	1	1	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0020	3099	1	1	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0021	3099	1	1	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0022	3099	1	0	1	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0023	3099	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0024	3099	1	0	1	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0025	3099	1	0	0	0	0	1	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	1/0	t0026	3099	1	0	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0027	3099	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	t0028	3099	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFTA2_chr6_30926353_30937170	0/1	t0001	210	175	16	23	111	7	17	copy fasta	SFTA2	chr6	30926353	30937170