JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFTA2_chr6_30926353_30937170	0/0	t0002	210	138	57	26	45	2	8	copy fasta	SFTA2	chr6	30926353	30937170
SFTA2_chr6_30926353_30937170	0/0	t0003	210	107	14	25	45	5	18	copy fasta	SFTA2	chr6	30926353	30937170
SFTA2_chr6_30926353_30937170	0/0	t0004	210	15	3	4	1	2	5	copy fasta	SFTA2	chr6	30926353	30937170
SFTPA1_chr10_79605939_79620443	0/1	t0001	1480	106	8	25	56	8	8	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0002	1469	101	23	14	50	2	12	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0003	1469	63	4	10	45	0	4	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0004	1469	32	5	13	8	0	6	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0005	1469	32	4	2	25	0	1	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0006	1480	31	24	3	4	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0007	1469	26	4	5	15	2	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0008	1480	12	0	5	0	0	7	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0009	1480	11	0	5	0	4	2	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0010	1469	9	0	0	9	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0011	1480	7	6	1	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0012	1469	4	2	0	2	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	1/0	t0013	1469	4	0	2	0	0	1	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0014	1469	3	2	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0015	1480	3	0	0	3	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0016	1469	2	0	0	0	0	2	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0017	1469	2	0	1	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0018	1469	2	2	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0019	1488	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0020	1469	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0021	1469	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0022	1469	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0023	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0024	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0025	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0026	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0027	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0028	1469	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0029	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0030	1480	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0031	1480	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0032	1503	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0033	1480	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0034	1480	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0035	1480	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0036	1480	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0037	1480	1	0	0	0	0	1	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0038	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0039	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	t0040	1469	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA2_chr10_79550852_79565407	1/1	t0001	1455	222	31	54	104	9	22	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0002	1455	83	12	9	46	1	15	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0003	1455	44	3	3	36	2	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0004	1455	23	2	11	5	0	5	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0005	1455	22	0	1	20	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0006	1455	16	5	2	9	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0007	1455	8	8	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407