Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BBX_chr3_107517962_107816339	0/0	t0025	6181	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	1/0	t0026	6184	1	0	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0027	6184	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0028	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0029	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0030	6184	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0031	6182	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0032	6183	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0033	6184	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0034	6181	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0035	6180	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0036	6181	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0037	6182	1	0	0	0	0	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0038	6182	1	0	0	1	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0039	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0040	6181	1	0	0	1	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0041	6181	1	0	0	0	1	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0042	6183	1	0	0	0	0	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0043	6182	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0044	6181	1	0	0	0	1	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0045	6182	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0046	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0047	6183	1	0	0	0	0	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0048	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0049	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0050	6181	1	0	0	0	1	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0051	6182	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0052	6182	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0053	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0054	6181	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0055	6183	1	0	0	1	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0056	6183	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0057	6184	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0058	6182	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	t0059	6181	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BCAM_chr19_44804103_44826421	1/1	t0001	523	210	20	50	104	11	23	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0002	523	189	66	27	67	7	22	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0003	527	5	5	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0004	527	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0005	523	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0006	523	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0007	523	1	0	1	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0008	523	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	t0009	523	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAN_chr1_156637117_156664528	0/1	t0001	562	245	64	41	91	10	38	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	1/0	t0002	562	169	31	34	83	8	12	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	t0003	563	3	0	2	1	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	t0004	563	1	0	0	1	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	t0005	562	1	0	1	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	t0006	562	1	1	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528