JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFTPA2_chr10_79550852_79565407	0/0	t0008	1455	7	5	0	2	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0009	1455	7	7	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0010	1455	6	4	1	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0011	1455	5	5	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0012	1455	4	3	1	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0013	1455	4	2	1	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0014	1455	3	3	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0015	1455	3	0	0	3	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0016	1455	2	2	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0017	1455	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0018	1455	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0019	1455	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0020	1455	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0021	1455	1	0	0	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0022	1455	1	0	0	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0023	1455	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0024	1455	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0025	1455	1	0	0	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0026	1455	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0027	1455	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0028	1455	1	0	1	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	t0029	1455	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPB_chr2_85652314_85673199	1/1	t0001	2405	202	10	42	111	8	29	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0002	2405	103	29	16	54	1	3	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0003	2405	58	8	14	20	3	13	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0004	2405	32	31	1	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0005	2405	6	6	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0006	2405	3	0	2	0	0	1	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0007	2407	3	3	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0008	2405	3	3	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0009	2405	3	3	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0010	2405	2	0	0	0	0	2	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0011	2725	2	1	1	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0012	2405	2	2	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0013	2405	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0014	2405	1	0	1	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0015	2407	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0016	2405	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0017	2405	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0018	2405	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	t0019	2405	1	0	1	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPC_chr8_22156798_22169479	1/1	t0001	264	292	55	42	158	10	25	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	t0002	264	105	11	19	59	1	15	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	t0003	264	33	0	20	1	4	8	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	t0004	264	29	25	3	0	1	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	t0005	264	6	6	0	0	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	t0006	264	1	1	0	0	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPD_chr10_79932740_79954105	1/1	t0001	156	424	90	78	202	12	40	copy fasta	SFTPD	chr10	79932740	79954105
SFXN1_chr5_175473560_175534742	0/1	t0001	3098	69	7	20	27	8	6	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0002	3102	67	23	11	19	3	11	copy fasta	SFXN1	chr5	175473560	175534742