JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFXN1_chr5_175473560_175534742	0/0	t0003	3097	66	2	16	36	2	10	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0004	3098	31	0	6	24	1	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0005	3102	13	10	3	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0006	3103	8	4	0	1	0	3	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0007	3102	8	0	2	3	0	3	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0008	3099	7	0	2	4	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0009	3097	6	3	2	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0010	3099	6	0	2	3	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0011	3098	5	0	0	5	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0012	3101	5	1	0	3	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0013	3102	5	5	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0014	3102	5	0	0	5	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0015	3102	4	4	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0016	3098	4	4	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0017	3098	4	1	0	3	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0018	3101	4	3	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0019	3102	3	3	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0020	3101	2	2	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0021	3102	2	0	0	2	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0022	3102	2	0	0	2	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0023	3102	2	2	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0024	3097	2	0	0	2	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0025	3102	2	0	0	2	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0026	3098	2	1	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0027	3102	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0028	3102	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0029	3102	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0030	3102	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0031	3102	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0032	3102	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0033	3102	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0034	3102	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0035	3104	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0036	3099	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0037	3103	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0038	3102	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0039	3101	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0040	3102	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0041	3103	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0042	3103	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0043	3101	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0044	3097	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0045	3098	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0046	3097	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0047	3103	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0048	3099	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0049	3102	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0050	3098	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	1/0	t0051	3098	1	0	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0052	3098	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742