JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFXN1_chr5_175473560_175534742	0/0	t0053	3097	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0054	3097	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0055	3097	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0056	3098	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0057	3101	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0058	3098	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0059	3099	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0060	3099	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0061	3097	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0062	3098	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0063	3103	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	t0064	3103	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN2_chr10_102709636_102748492	0/0	t0001	5823	102	17	13	67	2	3	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/1	t0002	5802	55	13	13	22	1	5	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0003	5804	47	13	9	13	4	8	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0004	5823	43	4	18	17	3	1	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0005	5803	24	4	5	15	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0006	5822	18	0	3	11	0	4	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0007	5803	10	0	0	10	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0008	5823	9	9	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0009	5801	6	5	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	1/0	t0010	5802	5	0	2	0	0	2	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0011	5804	4	0	0	4	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0012	5823	4	0	1	0	0	3	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0013	5802	4	4	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0014	5803	4	3	0	0	0	1	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0015	5804	4	1	2	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0016	5824	4	0	0	4	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0017	5801	3	1	2	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0018	5803	3	0	0	0	0	3	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0019	5803	3	3	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0020	5802	3	2	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0021	5823	3	3	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0022	5823	3	3	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0023	5802	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0024	5822	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0025	5803	2	2	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0026	5803	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0027	5803	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0028	5804	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0029	5802	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0030	5805	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0031	5804	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0032	5804	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0033	5804	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0034	5804	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0035	5801	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0036	5802	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0037	5822	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0038	5803	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492