JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFXN2_chr10_102709636_102748492	0/0	t0039	5803	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0040	5823	1	0	0	0	0	1	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0041	5803	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0042	5802	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0043	5802	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0044	5802	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0045	5803	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0046	5803	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0047	5802	1	0	0	0	0	1	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0048	5802	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0049	5801	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0050	5803	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0051	5802	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0052	5805	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0053	5824	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0054	5823	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0055	5823	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0056	5823	1	0	0	0	0	1	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0057	5824	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0058	5823	1	0	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	t0059	5802	1	0	0	0	0	1	copy fasta	SFXN2	chr10	102709636	102748492
SFXN3_chr10_101026234_101046241	1/1	t0001	2130	239	19	47	142	9	20	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0002	2129	61	23	20	4	4	10	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0003	2130	54	4	6	41	0	3	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0004	2130	12	12	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0005	2129	10	9	0	0	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0006	2129	9	2	2	5	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0007	2130	7	6	0	0	1	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0008	2129	6	1	3	0	0	2	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0009	2129	5	0	0	0	1	4	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0010	2130	5	0	1	0	0	4	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0011	2130	4	0	0	3	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0012	2129	3	2	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0013	2129	3	3	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0014	2130	3	3	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0015	2130	3	3	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0016	2130	2	0	0	2	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0017	2130	2	0	0	0	2	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0018	2130	2	1	0	0	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0019	2129	1	0	0	1	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0020	2129	1	0	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0021	2130	1	1	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0022	2130	1	0	0	0	1	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0023	2130	1	0	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0024	2129	1	0	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0025	2129	1	0	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0026	2130	1	1	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0027	2129	1	1	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0028	2130	1	0	0	1	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0029	2129	1	0	0	1	0	0	copy fasta	SFXN3	chr10	101026234	101046241