JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SFXN3_chr10_101026234_101046241	0/0	t0030	2130	1	1	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0031	2129	1	1	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	t0032	2130	1	1	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN4_chr10_119135767_119170714	0/1	t0001	543	364	70	78	151	18	46	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0002	543	57	16	6	33	0	2	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0003	543	4	4	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	1/0	t0004	543	2	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0005	543	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0006	543	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0007	543	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0008	543	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	t0009	543	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN5_chr2_72937036_73076712	1/0	t0001	2994	128	6	27	65	6	23	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/1	t0002	2993	43	25	5	11	0	1	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0003	2994	16	14	1	0	1	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0004	2994	8	7	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0005	2993	7	7	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0006	2994	6	4	2	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0007	2993	5	5	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0008	2993	5	1	1	0	1	2	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0009	2994	4	4	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0010	2994	4	4	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0011	2994	3	3	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0012	2994	2	1	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0013	2994	2	0	2	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0014	2994	2	0	2	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0015	2993	2	2	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0016	2993	2	1	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0017	2994	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0018	2994	1	0	0	0	1	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0019	2994	1	0	0	0	1	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0020	2994	1	0	0	1	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0021	2994	1	0	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0022	2993	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0023	2994	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0024	2993	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0025	2994	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0026	2994	1	0	0	1	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	t0027	2993	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SGCA_chr17_50161005_50180928	0/0	t0001	266	346	48	74	164	16	44	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/1	t0002	266	24	15	4	0	2	2	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	1/0	t0003	266	16	14	1	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0004	266	9	7	0	0	0	2	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0005	266	8	8	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0006	266	4	4	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0007	266	4	2	2	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0008	265	3	0	3	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0009	266	1	1	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	t0010	266	1	1	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCB_chr4_52015706_52043299	0/0	t0001	3292	170	56	17	76	3	18	copy fasta	SGCB	chr4	52015706	52043299