JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGCB_chr4_52015706_52043299	0/0	t0002	3292	116	8	37	48	10	13	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0003	3292	40	10	8	12	3	7	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0004	3288	8	0	0	8	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0005	3291	7	0	0	7	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0006	3292	4	3	0	0	0	1	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0007	3292	4	0	0	4	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0008	3292	3	3	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0009	3292	2	0	2	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0010	3292	2	0	0	0	2	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0011	3292	2	0	2	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0012	3292	1	0	0	1	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0013	3292	1	0	0	1	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0014	3292	1	0	1	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0015	3292	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0016	3292	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0017	3292	1	0	1	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0018	3292	1	0	0	1	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0019	3292	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0020	3292	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	t0021	3292	1	0	0	0	0	1	copy fasta	SGCB	chr4	52015706	52043299
SGCD_chr5_156322164_156772788	0/0	t0001	8511	21	13	3	3	0	2	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0002	8511	14	2	0	11	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0003	8511	8	2	2	0	1	3	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0004	8511	7	2	3	2	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	1/0	t0005	8511	6	0	1	2	1	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0006	8513	5	5	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0007	8511	5	0	0	5	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0008	8511	5	0	0	4	1	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0009	8512	4	4	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0010	8513	4	0	0	4	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/1	t0011	8517	4	1	1	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0012	8511	3	2	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0013	8511	3	3	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0014	8516	3	1	2	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0015	8510	3	1	0	2	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0016	8512	2	0	2	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0017	8512	2	1	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0018	8511	2	2	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0019	8511	2	2	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0020	8517	2	1	0	0	1	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0021	8516	2	1	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0022	8516	2	2	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0023	8512	2	1	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0024	8516	2	0	1	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0025	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0026	8512	1	0	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0027	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0028	8513	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0029	8514	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0030	8511	1	0	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788