JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGCD_chr5_156322164_156772788	0/0	t0031	8511	1	0	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0032	8512	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0033	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0034	8510	1	0	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0035	8510	1	0	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0036	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0037	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0038	8511	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0039	8512	1	0	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0040	8511	1	0	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0041	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0042	8512	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0043	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0044	8512	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0045	8517	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0046	8515	1	0	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0047	8512	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0048	8516	1	0	1	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0049	8513	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0050	8512	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0051	8511	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0052	8513	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0053	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0054	8511	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0055	8512	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0056	8510	1	0	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0057	8511	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0058	8517	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0059	8517	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0060	8513	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	t0061	8511	1	0	0	1	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCE_chr7_94579980_94661133	1/1	t0001	555	383	82	58	193	8	40	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	t0002	555	7	0	0	7	0	0	copy fasta	SGCE	chr7	94579980	94661133
SGCG_chr13_23175979_23330162	0/1	t0001	719	95	7	24	48	5	10	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0002	719	90	6	23	36	8	17	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	1/0	t0003	719	64	50	9	3	0	1	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0004	719	29	0	5	24	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0005	719	18	1	7	9	1	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0006	719	13	1	4	6	1	1	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0007	719	11	0	4	4	0	3	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0008	704	10	9	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0009	719	3	0	1	1	1	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0010	719	3	0	0	3	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0011	719	3	3	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0012	719	3	1	2	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0013	719	2	2	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0014	719	2	0	0	2	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0015	719	1	0	0	1	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0016	704	1	1	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0017	719	1	1	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162