JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SGCG_chr13_23175979_23330162	0/0	t0018	719	1	0	0	1	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0019	719	1	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0020	719	1	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0021	719	1	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	t0022	719	1	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCZ_chr8_14079845_15243431	0/0	t0001	6407	4	0	0	3	1	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0002	6406	3	0	3	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0003	6407	2	0	2	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0004	6408	2	2	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0005	6406	2	0	1	1	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0006	6407	2	0	0	2	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0007	6407	2	2	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0008	6407	2	2	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0009	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0010	6407	1	0	0	1	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0011	6407	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0012	6409	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0013	6406	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0014	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0015	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0016	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0017	6406	1	0	0	0	1	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0018	6408	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0019	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0020	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0021	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0022	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0023	6407	1	0	0	0	1	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0024	6407	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0025	6407	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0026	6406	1	0	0	0	1	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0027	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0028	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0029	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0030	6406	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0031	6406	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0032	6406	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0033	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0034	6408	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0035	6407	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0036	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0037	6408	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0038	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0039	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0040	6409	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0041	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0042	6407	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0043	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0044	6407	1	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0045	6408	1	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431