JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGCZ_chr8_14079845_15243431	0/0	t0046	6407	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0047	6407	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0048	6407	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0049	6407	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0050	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0051	6407	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0052	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0053	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0054	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0055	6406	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0056	6406	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0057	6406	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0058	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0059	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0060	6409	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0061	6407	1	0	0	0	0	1	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0062	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0063	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0064	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0065	6406	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0066	6407	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0067	6407	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0068	6407	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0069	6407	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0070	6407	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0071	6408	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0072	6408	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0073	6409	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0074	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0075	6407	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0076	6407	1	0	0	0	0	1	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0077	6406	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0078	6406	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0079	6408	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0080	6408	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0081	6407	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0082	6407	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0083	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0084	6408	1	0	1	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0085	6407	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0086	6409	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0087	6407	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0088	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0089	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0090	6407	1	0	0	1	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	t0091	6408	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGF29_chr16_28548920_28596790	1/0	t0001	278	186	45	23	86	3	28	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/1	t0002	277	136	39	33	44	7	12	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	t0003	277	15	0	8	7	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	t0004	277	3	3	0	0	0	0	copy fasta	SGF29	chr16	28548920	28596790