JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGF29_chr16_28548920_28596790	0/0	t0005	277	2	2	0	0	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	t0006	278	1	0	0	1	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	t0007	278	1	1	0	0	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	t0008	278	1	0	0	1	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	t0009	277	1	0	0	1	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGIP1_chr1_66529153_66756139	0/1	t0001	8258	64	11	10	34	1	7	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0002	8253	44	3	5	27	1	8	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	1/0	t0003	8251	42	3	11	19	3	5	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0004	8250	19	16	3	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0005	8250	14	2	9	0	0	3	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0006	8252	11	4	6	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0007	8251	8	5	0	3	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0008	8255	6	6	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0009	8245	6	0	0	6	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0010	8255	5	0	2	3	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0011	8258	5	5	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0012	8258	5	0	1	0	2	2	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0013	8251	4	0	1	0	0	3	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0014	8258	4	0	3	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0015	8252	3	0	2	0	1	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0016	8251	3	2	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0017	8251	3	0	0	3	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0018	8252	2	0	2	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0019	8251	2	0	1	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0020	8250	2	0	2	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0021	8253	2	0	2	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0022	8247	2	2	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0023	8258	2	2	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0024	8258	2	2	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0025	8260	2	1	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0026	8262	2	2	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0027	8258	2	0	0	0	2	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0028	8252	2	2	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0029	8253	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0030	8239	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0031	8251	1	0	0	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0032	8250	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0033	8250	1	0	0	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0034	8250	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0035	8253	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0036	8256	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0037	8242	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0038	8251	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0039	8253	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0040	8251	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0041	8253	1	0	0	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0042	8249	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0043	8253	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0044	8259	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0045	8253	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139