Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCAP29_chr7_107575246_107625478	0/0	t0001	2186	199	59	33	86	6	15	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	1/0	t0002	2186	95	7	19	58	3	7	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/1	t0003	2186	47	0	14	22	5	5	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0004	2186	16	0	0	16	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0005	2186	10	3	2	0	2	3	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0006	2186	7	6	1	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0007	2186	6	6	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0008	2186	3	0	3	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0009	2186	3	0	3	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0010	2186	2	0	0	0	0	2	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0011	2186	2	2	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0012	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0013	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0014	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0015	2186	1	0	1	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0016	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0017	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0018	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP29_chr7_107575246_107625478	0/0	t0019	2186	1	1	0	0	0	0	copy fasta	BCAP29	chr7	107575246	107625478
BCAP31_chrX_153695492_153729387	0/1	t0001	544	254	76	40	99	6	32	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	t0002	544	8	0	0	8	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	t0003	544	1	0	1	0	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	t0004	544	1	0	1	0	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	t0005	545	1	0	0	1	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	t0006	544	1	0	0	1	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	1/0	t0007	544	1	0	0	0	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAR1_chr16_75223181_75256624	0/0	t0001	1473	151	66	20	57	3	5	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0002	1473	139	6	27	80	8	18	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0003	1473	25	2	8	8	1	6	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0004	1473	25	2	11	1	3	8	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	1/1	t0005	1473	10	2	3	0	0	3	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0006	1473	5	0	1	0	0	4	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0007	1473	4	0	0	4	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0008	1473	3	0	0	3	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0009	1473	3	3	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0010	1473	3	3	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0011	1473	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0012	1473	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0013	1473	2	0	0	2	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0014	1473	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0015	1473	2	0	0	2	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0016	1473	2	0	2	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0017	1473	2	0	0	2	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0018	1473	1	0	0	0	0	1	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0019	1473	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0020	1473	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0021	1473	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0022	1473	1	0	0	0	1	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0023	1473	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0024	1473	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624