JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGIP1_chr1_66529153_66756139	0/0	t0046	8253	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0047	8288	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0048	8253	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0049	8249	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0050	8249	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0051	8246	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0052	8258	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0053	8260	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0054	8258	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0055	8259	1	0	0	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0056	8256	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0057	8258	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0058	8258	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0059	8262	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0060	8258	1	0	0	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0061	8258	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	t0062	8259	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGK1_chr6_134164256_134323112	1/0	t0001	1665	197	55	43	71	8	19	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/1	t0002	1664	20	11	3	0	0	5	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0003	1665	13	0	2	5	3	3	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0004	1665	8	5	2	0	0	1	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0005	1665	2	2	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0006	1665	2	2	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0007	1665	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0008	1665	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0009	1665	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0010	1665	1	0	0	1	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0011	1664	1	0	1	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0012	1665	1	0	0	1	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0013	1665	1	0	0	0	1	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	t0014	1665	1	0	1	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK2_chr20_43554027_43590627	1/1	t0001	768	395	71	68	198	12	44	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	t0002	768	12	8	4	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	t0003	768	8	8	0	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	t0004	768	1	1	0	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK3_chr8_66707781_66867022	1/1	t0001	2616	73	37	14	15	0	5	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0002	2616	41	18	5	10	0	8	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0003	2615	9	7	2	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0004	2616	4	4	0	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0005	2616	4	4	0	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0006	2616	4	4	0	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0007	2616	1	1	0	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0008	2616	1	0	0	0	0	1	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0009	2616	1	0	0	0	0	1	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0010	2616	1	0	1	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0011	2616	1	0	0	1	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0012	2616	1	0	0	0	0	1	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	t0013	2616	1	1	0	0	0	0	copy fasta	SGK3	chr8	66707781	66867022
SGMS1_chr10_50300600_50628956	0/0	t0001	2476	186	56	33	73	4	20	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	1/0	t0002	2476	60	6	21	25	3	4	copy fasta	SGMS1	chr10	50300600	50628956