JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGMS1_chr10_50300600_50628956	0/1	t0003	2476	28	1	5	17	0	4	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0004	2476	13	11	2	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0005	2476	9	0	3	5	1	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0006	2476	4	4	0	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0007	2476	2	2	0	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0008	2472	2	2	0	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0009	2476	2	1	1	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0010	2476	2	2	0	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0011	2476	1	0	1	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0012	2476	1	0	0	0	0	1	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0013	2476	1	0	0	0	0	1	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	t0014	2472	1	1	0	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS2_chr4_107819932_107920047	1/1	t0001	5143	168	31	48	58	6	23	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0002	5143	25	7	7	4	5	2	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0003	5143	14	12	2	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0004	5143	12	9	2	0	0	1	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0005	5143	9	7	2	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0006	5143	5	3	2	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0007	5143	4	2	1	0	1	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0008	5144	3	3	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0009	5143	3	0	1	0	0	2	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0010	5140	2	2	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0011	5451	2	0	0	0	0	2	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0012	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0013	5143	1	0	0	1	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0014	5143	1	0	0	0	0	1	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0015	5143	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0016	5143	1	0	0	0	0	1	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0017	5143	1	0	0	1	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0018	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0019	5143	1	0	0	1	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0020	5143	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0021	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0022	5143	1	0	0	0	1	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0023	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0024	5143	1	0	0	0	1	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0025	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0026	5143	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0027	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0028	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0029	5140	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0030	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0031	5143	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0032	5143	1	0	0	1	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0033	5143	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	t0034	5143	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGO1_chr3_20164484_20191206	0/1	t0001	1487	226	39	27	136	5	18	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0002	1487	49	8	4	37	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	1/0	t0003	1487	30	3	11	5	3	7	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0004	1487	27	1	14	0	4	8	copy fasta	SGO1	chr3	20164484	20191206