JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGO1_chr3_20164484_20191206	0/0	t0005	1487	20	2	8	10	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0006	1487	15	5	2	4	1	3	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0007	1487	14	0	6	1	3	4	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0008	1487	13	13	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0009	1487	7	6	1	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0010	1487	4	0	0	4	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0011	1487	3	1	2	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0012	1487	3	1	1	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0013	1487	3	3	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0014	1487	3	3	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0015	1487	2	2	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0016	1487	1	0	0	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0017	1487	1	0	0	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0018	1487	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0019	1487	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0020	1487	1	0	0	1	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0021	1534	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0022	1487	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0023	1487	1	0	0	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0024	1487	1	0	0	1	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0025	1487	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	t0026	1487	1	0	0	1	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO2_chr2_200521207_200589096	1/0	t0001	681	287	73	48	123	12	30	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	t0002	681	61	12	20	19	2	8	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/1	t0003	682	32	0	10	19	2	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	t0004	681	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	t0005	681	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	t0006	681	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	t0007	682	1	0	0	1	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGPL1_chr10_70810948_70886184	0/0	t0001	4070	96	22	17	49	1	7	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/1	t0002	4069	77	8	8	37	6	17	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0003	4071	27	0	5	20	1	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0004	4072	20	2	7	7	1	3	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0005	4068	17	5	4	5	2	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0006	4070	17	0	0	17	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0007	4070	14	4	1	1	6	2	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0008	4069	8	8	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0009	4068	8	1	7	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	1/0	t0010	4072	7	5	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0011	4071	7	2	5	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0012	4070	5	1	1	2	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0013	4069	5	1	0	2	1	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0014	4069	5	4	0	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0015	4070	5	2	3	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0016	4068	5	4	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0017	4069	4	0	0	4	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0018	4071	4	1	0	2	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0019	4070	4	0	3	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0020	4069	3	3	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0021	4061	3	3	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184