JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGPL1_chr10_70810948_70886184	0/0	t0022	4069	3	0	0	3	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0023	4070	3	0	0	3	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0024	4073	3	2	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0025	4071	3	0	0	3	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0026	4072	3	2	0	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0027	4070	2	0	1	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0028	4070	2	0	0	2	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0029	4070	2	2	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0030	4072	2	0	0	2	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0031	4068	2	0	0	0	0	2	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0032	4070	2	0	1	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0033	4071	2	0	1	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0034	4073	2	2	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0035	4070	2	2	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0036	4071	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0037	4071	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0038	4068	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0039	4072	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0040	4069	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0041	4069	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0042	4069	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0043	4069	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0044	4069	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0045	4069	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0046	4069	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0047	4067	1	0	0	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0048	4069	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0049	4071	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0050	4070	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0051	4072	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0052	4070	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0053	4070	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0054	4071	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0055	4071	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0056	4071	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0057	4073	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0058	4072	1	0	0	1	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0059	4070	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0060	4069	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0061	4066	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0062	4071	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	t0063	4068	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPP1_chr14_63679216_63733065	1/0	t0001	2011	218	48	44	87	7	31	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0002	2012	14	10	2	0	1	1	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0003	2012	12	10	2	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0004	2012	9	9	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0005	2011	5	0	0	5	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0006	2011	4	3	1	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0007	2010	4	0	0	4	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0008	2012	4	4	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065