JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGPP1_chr14_63679216_63733065	0/0	t0009	2011	3	3	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0010	2012	3	3	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0011	2012	2	1	1	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0012	2012	2	0	0	0	0	2	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0013	2011	2	0	0	2	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0014	2012	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0015	2012	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0016	2010	1	0	0	1	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0017	2011	1	0	0	1	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/1	t0018	2011	1	0	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	t0019	2011	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP2_chr2_222419543_222567621	0/0	t0001	3783	30	0	5	21	1	3	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0002	3788	23	0	1	16	1	5	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0003	3784	13	0	4	7	1	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0004	3790	9	1	2	1	2	3	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/1	t0005	3789	9	0	3	3	1	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0006	3787	9	0	3	5	1	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0007	3789	8	0	0	8	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0008	3786	8	2	4	0	1	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0009	3784	8	8	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0010	3787	6	0	3	0	1	2	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0011	3788	6	1	2	1	1	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0012	3790	6	0	0	5	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0013	3788	5	0	2	1	0	2	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0014	3791	4	0	2	2	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0015	3784	4	0	2	2	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0016	3785	4	0	1	1	0	2	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0017	3789	4	3	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0018	3789	4	4	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0019	3789	4	4	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0020	3799	4	3	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0021	3785	3	0	1	0	0	2	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0022	3788	3	1	0	0	2	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0023	3788	3	0	0	3	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0024	3789	3	0	0	2	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	1/0	t0025	3784	3	0	2	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0026	3791	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0027	3791	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0028	3790	2	0	0	1	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0029	3790	2	0	1	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0030	3787	2	0	0	2	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0031	3783	2	0	1	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0032	3788	2	0	2	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0033	3787	2	0	2	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0034	3789	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0035	3785	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0036	3790	2	1	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0037	3790	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0038	3783	2	0	0	2	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0039	3799	2	0	2	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621