JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGPP2_chr2_222419543_222567621	0/0	t0040	3789	1	0	0	0	1	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0041	3785	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0042	3786	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0043	3789	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0044	3783	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0045	3787	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0046	3790	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0047	3790	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0048	3787	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0049	3790	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0050	3787	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0051	3788	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0052	3789	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0053	3790	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0054	3790	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0055	3789	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0056	3789	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0057	3789	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0058	3788	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0059	3788	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0060	3788	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0061	3787	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0062	3787	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0063	3787	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0064	3790	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0065	3785	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0066	3784	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0067	3788	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0068	3785	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0069	3789	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0070	3785	1	0	0	0	1	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0071	3799	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0072	3791	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0073	3791	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0074	3788	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0075	3789	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0076	3788	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0077	3788	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0078	3786	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0079	3778	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0080	3785	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0081	3790	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0082	3789	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0083	3785	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0084	3782	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0085	3785	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0086	3784	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0087	3799	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0088	3792	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0089	3791	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621