JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGPP2_chr2_222419543_222567621	0/0	t0090	3790	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0091	3790	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0092	3784	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0093	3791	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0094	3789	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0095	3789	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0096	3783	1	0	0	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0097	3796	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0098	3800	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0099	3797	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	t0100	3791	1	0	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGSH_chr17_80204276_80225333	0/1	t0001	1197	212	21	35	117	13	25	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	1/0	t0002	1197	130	15	37	59	2	16	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0003	1197	36	27	0	4	0	5	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0004	1197	26	20	5	0	1	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0005	1254	6	5	1	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0006	1197	2	2	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0007	1197	2	0	0	2	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0008	1197	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0009	1197	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0010	1197	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0011	1184	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0012	1197	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	t0013	1197	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSM1_chr22_24801211_24932578	1/1	t0001	3420	101	31	27	23	5	13	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0002	3420	83	5	20	47	1	10	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0003	3419	47	20	8	8	1	10	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0004	3420	14	2	4	8	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0005	3420	10	1	3	6	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0006	3421	9	0	0	9	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0007	3419	9	0	2	3	1	3	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0008	3419	6	0	2	0	3	1	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0009	3420	6	6	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0010	3420	4	3	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0011	3420	4	0	0	4	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0012	3419	3	3	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0013	3420	3	3	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0014	3419	3	0	1	2	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0015	3420	2	2	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0016	3419	2	2	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0017	3419	2	2	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0018	3419	2	0	0	1	0	1	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0019	3420	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0020	3420	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0021	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0022	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0023	3419	1	0	0	0	0	1	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0024	3419	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0025	3419	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0026	3420	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578