JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGSM1_chr22_24801211_24932578	0/0	t0027	3419	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0028	3420	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0029	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0030	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0031	3419	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0032	3420	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0033	3419	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0034	3420	1	0	0	0	0	1	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0035	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0036	3421	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0037	3420	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0038	3420	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0039	3419	1	0	0	0	1	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0040	3420	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0041	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0042	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0043	3419	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0044	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0045	3420	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	t0046	3419	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM2_chr17_2332501_2386054	0/0	t0001	1723	291	60	60	129	10	32	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0002	1723	53	15	0	30	3	5	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	1/0	t0003	1723	37	3	6	20	2	5	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0004	1723	5	0	5	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0005	1720	4	4	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0006	1723	3	3	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0007	1723	3	0	3	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0008	1723	3	0	0	2	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0009	1708	3	1	0	1	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0010	1714	3	0	0	3	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0011	1723	2	0	0	2	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0012	1723	2	0	0	0	1	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0013	1723	2	0	2	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0014	1723	1	0	0	0	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0015	1723	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0016	1723	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0017	1723	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0018	1723	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/1	t0019	1723	1	0	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0020	1723	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0021	1723	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0022	1720	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0023	1705	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	t0024	1720	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM3_chr22_40365594_40415289	1/0	t0001	737	178	60	32	61	6	18	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/1	t0002	741	85	7	20	43	4	10	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0003	741	9	8	1	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0004	737	7	6	1	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0005	737	3	2	1	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0006	741	3	3	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289