JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGSM3_chr22_40365594_40415289	0/0	t0007	755	1	0	0	0	0	1	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0008	737	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0009	741	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0010	737	1	0	1	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0011	741	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0012	741	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	t0013	737	1	0	0	0	0	1	copy fasta	SGSM3	chr22	40365594	40415289
SGTA_chr19_2749715_2788273	1/1	t0001	1290	166	26	55	57	13	13	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0002	1290	121	15	13	75	5	13	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0003	1290	58	12	2	36	0	8	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0004	1290	15	11	4	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0005	1290	9	9	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0006	1290	3	3	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0007	1290	3	0	1	0	0	2	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0008	1290	3	3	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0009	1277	2	0	1	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0010	1290	2	2	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0011	1290	2	0	2	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0012	1290	2	2	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0013	1290	2	2	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0014	1290	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0015	1290	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0016	1290	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0017	1290	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0018	1290	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0019	1290	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0020	1290	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	t0021	1290	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTB_chr5_65660928_65727109	1/0	t0001	4534	125	15	25	66	7	11	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0002	4524	51	1	15	23	4	8	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0003	4531	47	18	9	14	3	3	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0004	4530	42	11	8	20	0	3	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0005	4533	21	1	2	16	0	2	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0006	4524	7	7	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0007	4533	5	4	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0008	4532	5	0	0	4	0	1	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0009	4535	5	5	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0010	4536	4	4	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0011	4532	4	4	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/1	t0012	4533	4	0	1	0	0	2	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0013	4536	3	3	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0014	4536	2	2	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0015	4531	2	1	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0016	4529	2	1	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0017	4532	2	1	0	0	0	1	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0018	4533	2	1	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0019	4534	2	1	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0020	4524	2	0	0	2	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0021	4534	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0022	4536	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109