JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SGTB_chr5_65660928_65727109	0/0	t0023	4534	1	0	0	1	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0024	4534	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0025	4535	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0026	4536	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0027	4535	1	0	0	1	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0028	4534	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0029	4531	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0030	4530	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0031	4533	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0032	4531	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0033	4531	1	0	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0034	4531	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0035	4524	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0036	4534	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0037	4533	1	0	0	1	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0038	4534	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0039	4523	1	0	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0040	4530	1	0	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0041	4524	1	0	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0042	4524	1	0	0	0	0	1	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	t0043	4524	1	0	1	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SH2B1_chr16_28858843_28879205	1/0	t0001	2638	276	53	30	149	9	34	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/1	t0002	2629	84	26	22	26	2	7	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0003	2638	5	0	1	1	1	2	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0004	2638	4	0	0	4	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0005	2638	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0006	2638	1	0	0	0	0	1	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0007	2638	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0008	2638	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0009	2638	1	0	1	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0010	2638	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0011	2638	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0012	2638	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0013	2629	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0014	2629	1	0	1	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	t0015	2626	1	0	1	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B2_chr7_102281868_102326711	0/1	t0001	337	216	24	38	113	11	29	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	t0002	337	159	65	34	38	7	15	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	t0003	337	23	0	0	23	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	t0004	337	3	3	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	t0005	337	2	2	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	t0006	337	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	t0007	337	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	1/0	t0008	338	1	0	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B3_chr12_111400923_111456623	1/1	t0001	3704	86	13	22	27	4	18	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0002	3704	83	15	4	54	2	8	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0003	3704	62	1	7	52	0	2	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0004	3704	23	19	4	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0005	3704	17	17	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0006	3704	16	0	1	9	0	6	copy fasta	SH2B3	chr12	111400923	111456623