Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCAR1_chr16_75223181_75256624	0/0	t0025	1473	1	0	0	0	0	1	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0026	1473	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	t0027	1473	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR3_chr1_93556741_93686837	1/1	t0001	752	185	63	37	61	6	16	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	t0002	752	12	12	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	t0003	752	2	2	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	t0004	752	1	0	1	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	t0005	752	1	0	0	1	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	t0006	726	1	1	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAS1_chr20_53938541_54075594	0/0	t0001	1546	44	4	6	25	2	7	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	1/0	t0002	1549	44	12	16	5	4	6	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0003	1546	30	2	4	19	1	4	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0004	1546	23	0	3	15	0	5	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0005	1546	20	0	2	18	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0006	1546	18	0	1	17	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0007	1546	12	0	0	10	0	2	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0008	1548	12	12	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0009	1548	8	6	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0010	1548	8	7	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0011	1546	7	0	0	7	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0012	1546	7	6	0	0	1	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0013	1549	6	0	1	5	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0014	1549	6	0	0	6	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0015	1546	6	0	0	6	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0016	1548	6	6	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0017	1549	6	4	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0018	1547	5	0	0	5	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0019	1546	5	0	0	4	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0020	1549	5	5	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0021	1549	5	2	3	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0022	1547	4	0	0	3	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0023	1546	4	4	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0024	1549	4	1	2	0	1	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0025	1547	4	1	0	2	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0026	1547	3	0	0	2	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0027	1547	3	0	0	3	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0028	1546	3	0	1	1	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0029	1546	3	0	1	0	1	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0030	1549	3	1	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0031	1548	3	0	2	0	1	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0032	1548	3	0	1	0	0	2	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/1	t0033	1548	3	0	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0034	1548	2	2	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0035	1546	2	0	0	2	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0036	1546	2	0	0	2	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0037	1549	2	0	2	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0038	1546	2	0	0	1	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0039	1549	2	2	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0040	1548	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0041	1549	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594