JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH2B3_chr12_111400923_111456623	0/0	t0007	3704	13	12	1	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0008	3704	4	0	4	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0009	3704	4	0	0	4	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0010	3704	3	3	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0011	3704	3	0	3	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0012	3704	2	0	0	2	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0013	3704	1	1	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0014	3704	1	1	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0015	3704	1	1	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0016	3704	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0017	3704	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0018	3704	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0019	3704	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0020	3704	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0021	3704	1	1	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	t0022	3704	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2D1A_chrX_124341563_124378160	0/1	t0001	1850	215	48	41	86	10	29	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0002	1849	56	1	10	43	1	1	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0003	1850	16	13	3	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0004	1850	10	8	2	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0005	1850	9	5	0	4	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	1/0	t0006	1850	2	0	1	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0007	1850	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0008	1874	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0009	1850	1	1	0	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0010	1850	1	0	0	0	0	1	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0011	1850	1	1	0	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0012	1850	1	1	0	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0013	1849	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0014	1850	1	1	0	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0015	1850	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	t0016	1850	1	0	0	0	0	1	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1B_chr1_162390268_162417136	0/0	t0001	2133	175	21	33	105	5	11	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0002	2133	135	41	24	56	3	11	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/1	t0003	2133	61	3	15	25	3	14	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0004	2133	21	11	0	3	2	5	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0005	2133	5	4	1	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0006	2133	5	5	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0007	2133	3	0	0	3	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0008	2133	2	0	0	0	0	2	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0009	2133	2	2	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0010	2133	2	0	0	2	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	1/0	t0011	2133	2	0	1	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0012	2133	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0013	2133	1	0	1	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0014	2133	1	0	0	0	0	1	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0015	2133	1	0	0	0	1	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0016	2133	1	1	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0017	2133	1	1	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0018	2133	1	0	1	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136