JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH2D1B_chr1_162390268_162417136	0/0	t0019	2133	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0020	2133	1	1	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0021	2133	1	1	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	t0022	2133	1	1	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D2A_chr1_156801243_156821848	1/1	t0001	475	395	92	75	164	15	47	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	t0002	475	6	6	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	t0003	475	3	0	0	3	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	t0004	475	3	0	1	0	1	1	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	t0005	475	2	0	2	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	t0006	475	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D3A_chr19_6747160_6772435	1/1	t0001	551	260	50	43	114	13	38	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0002	551	112	43	22	40	1	6	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0003	548	3	0	1	0	2	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0004	551	1	0	1	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0005	551	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0006	551	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0007	551	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	t0008	551	1	0	1	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3C_chr9_127733317_127783666	1/1	t0001	469	319	76	63	131	8	39	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	t0002	469	9	8	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	t0003	469	2	1	0	0	0	1	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	t0004	469	1	0	0	1	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	t0005	469	1	1	0	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D4A_chr8_19308693_19401218	1/0	t0001	1912	105	12	17	72	0	3	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/1	t0002	1907	95	18	23	23	11	19	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0003	1912	45	24	11	6	3	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0004	1912	42	0	16	18	0	8	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0005	1907	12	11	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0006	1912	11	11	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0007	1907	4	0	3	0	1	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0008	1907	4	0	0	0	0	4	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0009	1912	3	0	1	0	0	2	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0010	1912	3	3	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0011	1912	3	3	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0012	1912	3	1	0	1	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0013	1907	2	0	1	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0014	1912	2	2	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0015	1912	2	0	0	0	0	2	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0016	1912	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0017	1912	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0018	1912	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0019	1912	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0020	1912	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0021	1912	1	0	0	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0022	1907	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0023	1907	1	0	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0024	1907	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0025	1907	1	0	0	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0026	1907	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0027	1912	1	0	0	0	1	0	copy fasta	SH2D4A	chr8	19308693	19401218