JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH2D4A_chr8_19308693_19401218	0/0	t0028	1912	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0029	1912	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0030	1912	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0031	1912	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0032	1912	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	t0033	1912	1	0	0	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4B_chr10_80532902_80651560	1/0	t0001	2906	174	46	28	79	5	15	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/1	t0002	2906	65	2	17	33	4	8	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0003	2906	25	13	6	3	1	2	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0004	2906	13	10	2	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0005	2906	6	1	3	2	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0006	2906	4	4	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0007	2906	3	3	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0008	2906	3	0	0	0	0	3	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0009	2906	2	1	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0010	2906	2	2	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0011	2906	2	0	0	2	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0012	2906	2	0	0	1	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0013	2906	2	0	0	2	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0014	2906	2	0	2	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0015	2906	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0016	2906	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0017	2906	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0018	2906	1	0	0	1	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0019	2906	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0020	2906	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0021	2906	1	0	0	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0022	2906	1	0	0	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0023	2906	1	0	0	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0024	2906	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0025	2906	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0026	2906	1	0	0	1	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0027	2906	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0028	2906	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0029	2906	1	0	0	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0030	2906	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	t0031	2906	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D5_chr1_20714731_20737703	0/0	t0001	2627	135	7	10	96	3	19	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	1/0	t0002	2627	76	13	18	26	6	12	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0003	2627	64	9	28	13	5	9	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0004	2627	59	28	5	21	0	5	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0005	2627	15	13	2	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0006	2627	10	8	2	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0007	2627	10	7	3	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0008	2627	9	0	7	2	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0009	2627	7	2	0	5	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0010	2627	3	0	1	0	1	1	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0011	2627	2	2	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0012	2627	2	0	1	0	1	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0013	2627	2	2	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703