JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH2D5_chr1_20714731_20737703	0/0	t0014	2627	2	2	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0015	2627	2	0	2	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0016	2627	1	0	0	1	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0017	2627	1	0	0	1	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0018	2627	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0019	2627	1	0	1	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/1	t0020	2627	1	0	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0021	2627	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0022	2627	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0023	2627	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0024	2627	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0025	2627	1	0	0	1	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0026	2627	1	0	0	1	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	t0027	2627	1	0	0	1	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D6_chr2_85413714_85442029	1/1	t0001	1215	383	83	66	175	14	43	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0002	1215	11	0	2	2	4	3	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0003	1215	9	0	0	9	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0004	1215	4	3	1	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0005	1215	3	3	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0006	1215	3	2	1	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0007	1215	2	2	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0008	1215	1	0	0	0	0	1	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0009	1215	1	0	0	0	0	1	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	t0010	1215	1	1	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D7_chr15_78087561_78109362	1/1	t0001	872	413	77	79	187	18	50	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	t0002	872	11	8	0	3	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	t0003	872	3	3	0	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	t0004	872	2	2	0	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	t0005	872	2	2	0	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	t0006	872	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH3BGRL2_chr6_79626329_79708655	0/0	t0001	4279	74	5	16	41	0	12	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0002	4279	64	8	15	26	4	11	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0003	4277	48	8	9	28	0	3	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0004	4279	31	3	15	9	2	2	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	1/0	t0005	4280	30	7	6	13	2	1	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0006	4278	14	14	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/1	t0007	4279	8	0	3	0	2	2	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0008	4281	8	8	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0009	4280	7	2	0	5	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0010	4279	7	6	1	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0011	4278	6	5	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0012	4278	6	6	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0013	4279	4	0	0	0	0	4	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0014	4279	4	0	0	3	0	1	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0015	4279	4	3	1	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0016	4278	3	0	2	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0017	4281	3	3	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0018	4278	2	2	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0019	4279	2	1	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0020	4279	2	0	0	0	0	2	copy fasta	SH3BGRL2	chr6	79626329	79708655